Graphical user interface
OakVar's graphical user interface (GUI) is launched by
A web server will be started on the terminal and your default web browser will open a new tab, which will show the graphical user interface of OakVar.
The log output of the web server will be at
conf_dir shown by
ov system config. Also,
ov gui --debug
will display any error the server encounters on the terminal as well.
OakVar GUI has two tabs,
Jobs tab of OakVar GUI, you can submit jobs and launch
interactive result viewer for individual jobs.
Store tab of OakVar GUI, you can install and uninstall OakVar
modules as well as explore the details of each module. OakVar's
web store brings OakVar's own modules as well as OpenCRAVAT's modules.
ov gui with a path to an OakVar result SQLite database file will launch
the OakVar result viewer. For example,
ov gui sample_1.vcf.sqlite
will launch the OakVar result viewer on the analysis data in
Just-DNA-Seq group wrote a very nice tutorial on using OakVar GUI. Please refer to their doc for more details of using OakVar GUI.