Debugging

Entrypoints

Command	Entrypoint
ov	oakvar/__main__.py
ov run	oakvar/cli/run.py
ov report	oakvar/cli/report.py
ov gui	oakvar/cli/gui.py

oakvar/__main__.py is intentional, to make python -m oakvar style of use possible.

Base classes

OakVar modules inherit one of OakVar base module classes. Converters, mappers, annotators, postaggregators, and reporters have different base module classes.

Type	Module	Class
converter	oakvar/base/converter.py	BaseConverter
mapper	oakvar/base/mapper.py	BaseMapper
annotator	oakvar/base/annotator.py	BaseAnnotator
postaggregator	oakvar/base/postaggregator.py	BasePostAggregator
reporter	oakvar/cli/report.py	BaseReporter
common	oakvar/base/commonmodule.py	BaseCommonModule

To develop a new OakVar module, it should inherit one of these base classes. For example, an annotator module's class definition should be:

from oakvar import BaseAnnotator

class Annotator(BaseAnnotator):